Reference
scCAMEL_SWAPLINE v1.0 pipeline
Hu Y.#, Jiang Y.#, Behnan J., Ribeiro M. M., Kalantzi C., Zhang M., Lou D., Haring M., Sharma N., Okawa S., Del Sol A., Adameyko I., Svensson M., Persson O., Ernfors P. “Neural-network learning defines glioblastoma features to be of neural crest perivascular or radial glia lineages”, Science Advances, 2022 Jun 10;8(23). https://www.science.org/doi/10.1126/sciadv.abm6340
Kupari J., Usoskin D., Parisien M., Lou D., Hu Y., Fatt M., Lonnerberg P., Spangberg M., Eriksson B., Barkas N., Kharchenko P. V., Lore K., Khoury S., Diatchenko L., Ernfors P. Single cell transcriptomics of primate sensory neurons identifies cell types associated with chronic pain, Nature Communications, 2021 Mar 8;12(1):1510. PMID: 33686078.
He B., Chen P., Zambrano S., Dabaghie D., Hu Y., Moller-Hackbarth K., Unnersjo-Jess D., Korkut G. G., Charrin E., Jeansson M., Bintanel-Morcillo M., Witasp A., Wennberg L., Wernerson A., Schermer B., Benzing T., Ernfors P., Betsholtz C., Lal M., Sandberg R., Patrakka J. Single-cell RNA sequencing reveals the mesangial identity and species diversity of glomerular cell transcriptomes, Nature Communications 12, 2141, 2021. PMID: 33837218.
scCAMEL_SWAPLINE v2 pipeline
Xu Y., Lou D., Chen P., Usoskin D., Pan J., Li G., Li F., Huang S., Tang R., Hu X., Bedoya-Reina O. C., de Krijger R. R., Tischler A. S., Schlisio S., Ernfors P.#*, Hu Y.#* (Lead Contact), Wang J.#*. Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.
scCAMEL_EVO pipeline
Yu H.*, Nagi S.*, Usoskin D., Hu Y., Kupari J., Bouchatta O., Cranfill L. S., Su Y., Lv Y., Song H., Ming G., Prouty S., Seykora J., Wu H., Ma M., Olausson H.#, Ernfors P.#, Luo W.#. Leveraging deep single-soma RNA sequencing to explore the neural basis of human somatosensation, Nature Neuroscience, 2024 Nov 4. PMID: 39496796.
scCAMEL_VICUNA pipeline
Xu Y., Lou D., Chen P., Usoskin D., Pan J., Li G., Li F., Huang S., Tang R., Hu X., Bedoya-Reina O. C., de Krijger R. R., Tischler A. S., Schlisio S., Ernfors P.#*, Hu Y.#* (Lead Contact), Wang J.#*. Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity.
scCAMEL_VICUNA cell-cell communication pipeline
Gao Y., Yao X., Zhai Y., Li L., Li H., Sun X., Yu P., Xue T., Li Y.#, Hu Y.#. Single cell transcriptional zonation of human psoriasis skin identifies an alternative immunoregulatory axis conducted by skin resident cells, Cell Death & Disease, 2021 May 6;12(5):450. PMID: 33958582.
Fatt M., Zhang M., Kupari J., Altinkok M., Yang Y., Hu Y., Svenningsson P., Ernfors P. Morphine-responsive neurons that regulate mechanical antinociception, Science, 2024 Aug 30;385(6712):eado6593.